COMPLETE LIST OF PUBLICATIONS - D. Arcila

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              Under review/in press

19. R. Betancur-R.*, D. Arcila*, R. Vari, L. Hughes, M. Sabaj, C. Oliveira & G. Ortí. Under review. Testing conflicting hypotheses in phylogenomics: putting the freshwater fish order Characiformes back together again. *Equal contribution.


2018


18. D. Arcila, P. Petry & G. Ortí. Accepted. Phylogenetic relationships of the family Tarumaniidae (Characiformes) based on nuclear and mitochondrial data. Neotropical Ichthyology.

17. Hughes, L.C., G. Ortí, Y. Huang, Y. Sun, C.C. Baldwin, A.W. Thompson, D. Arcila, R. Betancur-R, C. Li, L. Becker et al. (2018). Comprehensive phylogeny of ray-finned fishes (Actinopterygii) based on transcriptomic and genomic data. Proceedings of the National Academy of Sciences, 201719358. PDFSupplementPNAS comment by M. Alfaro.



2017

16. Arcila, D. & J. Tyler. 2017. Integrating molecules and fossils reveal multiple diversification shifts in fishes during the Cenozoic. Proceedings of the Royal Society of London B 284 (1866), 20171771. PDF.

15. Lavoue, S., M. Arnegard, D. Rabosky, P. McIntyre, D. Arcila, R. Vari & M. Nishida. 2017. Trophic evolution in African citharinoid fishes (Teleostei: Characiformes) and the origin of intraordinal pterygophagy. Molecular Phylogenetics and Evolution 113, 23-32. PDF.

14. Arcila, D.G. Ortí, R. Vari, J. W. Armbruster, M. Stiassny, K. D. Ko, M. H. Sabaj, J. Lundberg, L. J. Revell R. Betancur-R. 2017. Genome-wide interrogation advances resolution of recalcitrant groups in the Tree of Life. Nature Ecology & Evolution 1: 0020. PDF & SupplementFeatured in "News and Views" about the paper by S. Mirarabnews outletin SpanishEl TiempoCiencia Cafe pa' Sumerce, UPR, and "Behind the Paper" post. For a GGI tutorial see here.  



2016
 
13. Bannikov, A.F., G. Carnevale, D. Arcila & J.C. Tyler. 2016. A new family of gymnodont fish (Tetraodontiformes) from the earliest Eocene of the Peri-Tethys (Kabardino-Balkaria, northern Caucasus, Russia). Journal of Systematic Palaeontology 15, 1-18. PDF.  Featured in NatGeo.



2015

12. Thomaz, A*., D. Arcila*, G. Ortí & L.R. Malabarba. 2015. Molecular phylogeny of the subfamily Stevardiinae Gill, 1858 (Characiformes: Characidae): classification and the evolution of reproductive traits. BMC Evolutionary Biology 15, 146. PDF. *Equal contribution. 
  
11. Arcila, D.*, A. Pyron, J. Tyler, G. Ortí & R. Betancur-R.*2015. An evaluation of fossil tip-dating versus node-age calibrations in tetraodontiform fishesMolecular Phylogenetics and Evolution 82(2015): 131-145. PDF. *Equal contribution.



2013

10. Betancur-R., R., R.E. Broughton, E.O. Wiley, K. Carpenter, J.A. Lopez, C. Li, N.I. Holcroft, D. Arcila, M. Sanciangco, J. Cureton, F. Zhang, T. Buser, M. Campbell, T. Rowley, J.A. Ballesteros, G. Lu, T. Grande, G. Arratia & G. Ortí. 2013. The tree of life and a new classification of bony fishes. PLoS Currents Tree of Life. Pub Med Version. Press releases: Science Dailye! Science NewsPLoS Blogs.

9. Arcila, D., R.P. Vari & N. Menezes. 2013. Revision of the neotropical genus Acrobrycon (Ostariophysi: Characiformes) with description of two new species. Copeia 4, 604-611. PDF. 



2010

8. Román-Valencia, C. & D. Arcila*. 2010. Five new species Hemibrycon (Characiformes: Characidae) from the Rio Magdalena basin, Colombia. Revista de Biología Tropical 58, 339-356. *Undergraduate student. PDF. 

7. Román-Valencia, C., D. Arcila* & M.D. García. 2010. Diversidad fenotípica en peces del género Hemibrycon (Characiformes, Characidae) del sistema del río Magdalena, Colombia. Brenesia 71-72, 27-40. *Undergraduate student.



2009

6. 
Román-Valencia, C.,  D. Arcila* & R. Ruiz-C. 2009. Two new species of Hemibrycon (Characiformes: Characidae) from the Magdalena river, Colombia. Animal Biodiversity and Conservation 32.2, 77-87. *Undergraduate student. PDF. 

  
5. Román-Valencia, C., D. Arcila*, H. Hurtado. 2009. Variación morfológica de las poblaciones de Hemibrycon boquiae y H. rafaelense (Characiformes: Characidae) en el río Cauca, Colombia. Revista de Biología Tropical 57, 541-556. *Undergraduate student. PDF.



2008

4. Román-Valencia, C. & D. Arcila*. 2008 Hemibrycon rafaelense n. sp. (Characiformes: Characidae), a new species from the upper Cauca River, with keys to Colombian species. Animal Biodiversity and Conservation 31.1, 67-75. *Undergraduate student. PDF.



2007

3. García-Alzate, C.A., C. Román-Valencia, J.A. Vanegas-Ríos & D. Arcila*. 2007. Análisis fisicoquímico y biológico comparado en dos quebradas en alta montaña. Revista Investigaciones Universidad del Quindío 17, 57-80. *Undergraduate student.



2006

2. Vanegas-Ríos, J.A. & D. Arcila*. 2006. Diversidad y abundancia de larvas de Trichoptera en la quebrada Boquia, Salento (Colombia). Revista Universidad del Quindío 12, 149-161. *Undergraduate student.



2005

1. Román-Valencia, C., J.G. Cadavid, J. Vanegas & D. Arcila*. 2005. Análisis de algunas variables físicas, químicas y biológicas en tres quebradas de la cuenca alta del río Cauca, Colombia. Revista de Investigaciones de la Universidad del Quindío 15, 83-96. *Undergraduate student.

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